SNP Profiles of PA 137 [PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCCCTTTACCTTTCCCCAAGGCCAG
1._RUQ_1081
CCGGCCCTTTACCTTTCCCCAAGGCCAG
2._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
3._PA_137_[PER]
CCGGCCCTTTACCTTTCC_AAGGCCAG
4._PA_137_[PER]
CCGGCCCTTTACCTTTCC_AAGGCCAG
5._RUQ_1081
_GGCCCT___TT____CCAG
6._RUQ_36
_--CT___-____-AG
7._RUQ_1081
__CC____TT_CC_GG_AG
8._RUQ_36
CCGGCCCTTTACCTTTCCCCAAGGCCAG
9._RUQ_1081
CCGGCCCTTTACCTTTCCCCAAGGCCAG
10._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
11._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
12._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
13._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
14._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
15._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
16._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
17._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
18._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
19._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
20._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
21._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
22._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
23._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
24._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
25._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
26._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
27._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
28._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
29._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
30._RUQ_36
CCAGCGCTTTACCTGTCC_AAGG_AG
31._PA137[PER]
__GG_________CC_
32._RUQ_36
GGGGGGAGAAACAGAA__AAGGGGAG
33._MITC-000400
GGGGGGAGAAACAGAA__AAGGGGAG
34._PA_137_[PER]_Fld#_201_Plt#_2
GGGGGGAGAAACAGAA__AAGGGGAG
 1516171819202122232425262728
_Input profile
CTAACGCTCCGGGGAATTCCCGGGCTAC
1._RUQ_1081
CTAACGCTCCGGGGAATTCCCGGGCTAC
2._PA_137_[PER]
CTAACGCTCCGG-AATTCCCGGGCTAC
3._PA_137_[PER]
CTAACGCTCCGGGGAATTCCCGGGCTAC
4._PA_137_[PER]
CTAACGCTCCGGGGAATTCCCGGGCTAC
5._RUQ_1081
____CCGGGG_TTCCCGGGCTAC
6._RUQ_36
____CC-GG_--CGGGCTAC
7._RUQ_1081
_____GGGGAA_CCCG__AC
8._RUQ_36
CTAACGCTCCGGGGAACTCCCGGGCTAC
9._RUQ_1081
CTAACGCTCCGGGGAACTCCCGGGCTAC
10._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
11._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
12._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
13._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
14._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
15._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
16._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
17._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
18._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
19._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
20._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
21._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
22._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
23._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
24._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
25._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
26._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
27._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
28._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
29._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
30._RUQ_36
CTAACGCTCC_GTAATT_CGGGCTAC
31._PA137[PER]
CT___CCCC___CCCG___
32._RUQ_36
AGAACGAGGGCCCC_AACCCGCC_AC
33._MITC-000400
AGAACGAGGGCCCC_AACCCGCC_AC
34._PA_137_[PER]_Fld#_201_Plt#_2
AGAACGAGGGCCCC_AACCCGCC_AC
 293031323334353637383940  
_Input profile
AGGGAACCAGCCACCTGTACATGGX_XX_X
1._RUQ_1081
AGGGAACCAGCCACCTGTACATGGX_XX_X
2._PA_137_[PER]
AGGGAACCAG-ACCTGTACATGGX_XX_X
3._PA_137_[PER]
AGGGAACCAG_ACCTGTACATGGX_XX_X
4._PA_137_[PER]
AGGGAACCAG_ACCTGTACATGGX_XX_X
5._RUQ_1081
AG_AACCAGCCACCTGTAC__X_XX_X
6._RUQ_36
AG_AA-AG-AC-GTAC__X_XX_X
7._RUQ_1081
____AG____AC__X_XX_X
8._RUQ_36
AGGGAACCAGCCACCTGTACATGGX_XX_X
9._RUQ_1081
AGGGAACCAGCCACCTGTACATGGX_XX_X
10._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
11._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
12._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
13._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
14._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
15._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
16._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
17._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
18._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
19._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
20._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
21._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
22._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
23._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
24._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
25._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
26._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
27._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
28._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
29._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
30._RUQ_36
AGGGAA_AGCGACCTGTACATGGX_XX_X
31._PA137[PER]
__AA_AGGGACCT_AC__X_XX_X
32._RUQ_36
_GGAAGGAGGGACAGACACATGGX_XX_X
33._MITC-000400
_GGAAGGAGGGACAGACACATGGX_XX_X
34._PA_137_[PER]_Fld#_201_Plt#_2
_GGAAGGAGGGACAGACACATGGX_XX_X

Input profile: PA_137_[PER]

 
 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

1._PA_137_[PER] RUQ_1081

identical
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
38 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

3._PA_137_[PER]

identical
38 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
38 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] RUQ_1081

identical
24 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_137_[PER] RUQ_36

identical
14 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._PA_137_[PER] RUQ_1081

identical
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

8._PA_137_[PER] RUQ_36

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_1081

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

17._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

21._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

24._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_36

92.9 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_137_[PER] PA137[PER]

76.9 %
13 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

32._PA_137_[PER] RUQ_36

48.6 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

33._PA_137_[PER] MITC-000400

48.6 %
35 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

34._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

48.6 %
35 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25